Basic Information
Locus ID:
evm.TU.LG02.2711
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 47383646 | 47389396 | - | evm.TU.LG02.2711 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 106,971.63 Da | 46.92 | 74.38 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 449 | 749 | 5.1E-41 | IPR001394 |
| Pfam | PF01753 | MYND finger | 69 | 106 | 7.9E-9 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 66 | 112 | 9.94E-12 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 446 | 757 | 3.92E-81 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 442 | 759 | 2.1E-86 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 57 | 111 | 4.1E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 449 | 752 | 50.417461 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 69 | 106 | 11.836004 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 69 | 106 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 450 | 465 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 139 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.2 | - | 0 |
| RefSeq | XP_031258966.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Pistacia vera] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5NFF5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Citrus unshiu OX=55188 GN=CUMW_039280 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology