Basic Information
Locus ID:
evm.TU.LG02.2635
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 46586235 | 46591672 | - | evm.TU.LG02.2635 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 94,571.36 Da | 35.18 | 87.36 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 18 | 315 | 2.67004E-89 | - |
| Pfam | PF13041 | PPR repeat family | 518 | 564 | 1.6E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 621 | 649 | 1.6E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 592 | 617 | 0.93 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 491 | 517 | 0.0035 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 416 | 462 | 4.7E-8 | IPR002885 |
| Pfam | PF00400 | WD domain, G-beta repeat | 149 | 187 | 1.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 107 | 145 | 4.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 67 | 103 | 2.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 314 | 0.069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 234 | 274 | 6.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 192 | 230 | 3.0E-5 | IPR001680 |
| Pfam | PF01535 | PPR repeat | 390 | 415 | 0.37 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 760 | 788 | 0.12 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 652 | 701 | 1.2E-4 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 585 | 769 | 4.17E-7 | IPR011990 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 309 | 1.62E-88 | IPR036322 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 569 | 618 | 2.6E-5 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 316 | 1.1E-119 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 326 | 467 | 1.8E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 720 | 794 | 1.3E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 619 | 719 | 5.7E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 468 | 568 | 3.2E-18 | IPR011990 |
| SMART | SM00320 | WD40_4 | 64 | 103 | 2.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 14 | 53 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 145 | 5.8E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 230 | 7.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 187 | 8.7E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 275 | 9.9E-4 | IPR001680 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 657 | 689 | 9.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 621 | 649 | 0.0029 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 521 | 550 | 4.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 492 | 517 | 0.001 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 418 | 452 | 1.6E-4 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 113 | 154 | 18.194637 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 71 | 112 | 17.459436 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 71 | 107 | 13.211037 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 113 | 150 | 14.001942 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 196 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 198 | 235 | 11.233774 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | 9.591195 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 198 | 239 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 619 | 654 | 8.933517 | IPR002885 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 284 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 518 | 552 | 9.843305 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 655 | 689 | 9.591195 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 756 | 790 | 8.604678 | IPR002885 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 187 | 11.523771 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 90 | 104 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 262 | 276 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 132 | 146 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 262 | 276 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 132 | 146 | 1.4E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 90 | 104 | 1.4E-7 | IPR020472 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02330.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_031264276.1 | pentatricopeptide repeat-containing protein At3g02330, mitochondrial [Pistacia vera] | 0 |
| Q9FWA6 | Pentatricopeptide repeat-containing protein At3g02330, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E90 PE=2 SV=2 | 0 | |
| TrEMBL | A0A438KPQ7 | Pentatricopeptide repeat-containing protein OS=Vitis vinifera OX=29760 GN=PCMP-E76_14 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59044, Sbi_jg63579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23302 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02459, Sgl07612 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0024540, CQ.Regalona.r1.6AG0008160 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G26839 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g14260 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2635 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.999, evm.TU.LG25.339 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g26870, gene.Posoc03g26890 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-812 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7526 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2415 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.240 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001976, Maker00002066 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19228 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1854 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.16337_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0297 |