Basic Information
Locus ID:
evm.TU.LG02.2598
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 55063063 | 55067670 | + | evm.TU.LG02.2598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 41,468.21 Da | 60.88 | 40.97 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 391 | 2.4E-5 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 36 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034699503.1 | uncharacterized protein LOC117924882 [Vitis riparia] | 0 |
| TrEMBL | A0A438HVC6 | RING-type domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_040993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9212 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014916 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24782, Sbi_jg8648 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19958 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022274 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42562, Sgl47316 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017310, CQ.Regalona.r1.8BG0018280 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2598, evm.TU.LG23.821 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2150 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25336 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8764 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1256 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000021 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1938 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9242 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602911 |
| Solanaceae | Solanum chilense | 1 | SOLCI004411300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025734 |