Basic Information
Locus ID:
evm.TU.LG02.2475
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52450020 | 52467142 | - | evm.TU.LG02.2475 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 36,621.34 Da | 40.81 | 99.01 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 6.85133E-112 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 206 | 4.7E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 171 | 321 | 9.68E-20 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 18 | 220 | 2.01E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 4 | 226 | 3.2E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 322 | 3.8E-23 | IPR027417 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 3.7E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 321 | 9.4E-111 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 23.511427 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 250 | 333 | 8.830872 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_048490996.1 | ATP-dependent DNA helicase Q-like 3 isoform X4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EJK4 | ATP-dependent DNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology