Basic Information
Locus ID:
evm.TU.LG02.2347
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
TRIP-1
Description:
component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 43333298 | 43335431 | + | evm.TU.LG02.2347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 13,220.04 Da | 41.47 | 103.92 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 105 | 2.4E-17 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46280.1 | TGF-beta receptor interacting protein 1. Encodes a homolog of mammalian TGF-beta receptor interacting protein. Co-immunoprecipitates with BRI1 and can be phosphorylated in vitro by BRI1 at specific sites (Thr-14, Thr-89, and either Thr-197 or Ser-198). May therefore be a cytoplasmic BRI1 substrate and involved in brassinosteroid regulated plant growth and development.The encoded protein has two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_028063618.1 | eukaryotic translation initiation factor 3 subunit I-like isoform X4 [Camellia sinensis] | 0 |
| Q38884 | Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana OX=3702 GN=TIF3I1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2R6R2A0 | Eukaryotic translation initiation factor 3 subunit I OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc11423 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2347 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39300.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107639 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00017498, Maker00017512, Maker00017577 |