Basic Information
Locus ID:
evm.TU.LG02.2333
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 49391818 | 49408997 | - | evm.TU.LG02.2333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 120,269.45 Da | 47.03 | 75.96 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 309 | 666 | 2.99768E-80 | - |
| CDD | cd18793 | SF2_C_SNF | 922 | 1026 | 1.0122E-54 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 919 | 1017 | 4.7E-17 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 782 | 818 | 2.0E-7 | IPR018957 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 329 | 743 | 3.8E-68 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 295 | 666 | 2.92E-45 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 778 | 832 | 2.79E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 674 | 1073 | 1.75E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 287 | 369 | 5.2E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 557 | 667 | 1.5E-29 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 765 | 833 | 2.1E-12 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 841 | 1068 | 1.4E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 429 | 523 | 1.2E-11 | IPR038718 |
| SMART | SM00490 | helicmild6 | 934 | 1017 | 6.8E-20 | IPR001650 |
| SMART | SM00487 | ultradead3 | 305 | 643 | 3.9E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 450 | 628 | 11.250996 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 906 | 1070 | 14.621914 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 782 | 821 | 11.338544 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 797 | 806 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 432 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 556 | - | - |
| Coils | Coil | Coil | 354 | 374 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_019107268.1 | helicase-like transcription factor CHR28 [Beta vulgaris subsp. vulgaris] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology