Basic Information
Locus ID:
evm.TU.LG02.2274
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
GGPS2
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 42579917 | 42581026 | - | evm.TU.LG02.2274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 40,027.53 Da | 36.10 | 99.67 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00685 | Trans_IPPS_HT | 100 | 367 | 3.2514E-97 | IPR000092 |
| Pfam | PF00348 | Polyprenyl synthetase | 104 | 339 | 1.1E-57 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 78 | 346 | 5.76E-89 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 75 | 369 | 1.0E-108 | IPR008949 |
| ProSitePatterns | PS00444 | Polyprenyl synthases signature 2. | 287 | 299 | - | IPR033749 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 154 | 170 | - | IPR033749 |
| SFLD | SFLDG01017 | Polyprenyl Transferase Like | 80 | 367 | 0.0 | - |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 80 | 367 | 0.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36810.1 | geranylgeranyl pyrophosphate synthase 1. Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. | 0 |
| RefSeq | XP_031253139.1 | geranylgeranyl pyrophosphate synthase, chloroplastic-like [Pistacia vera] | 0 |
| Q94ID7 | Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5FXS6 | Polyprenyl synthetase OS=Trema orientale OX=63057 GN=TorRG33x02_015820 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology