Basic Information
Locus ID:
evm.TU.LG02.2261
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 42391249 | 42395037 | + | evm.TU.LG02.2261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 73,047.33 Da | 84.00 | 59.62 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 257 | 309 | 8.51583E-28 | - |
| CDD | cd06503 | ATP-synt_Fo_b | 119 | 218 | 4.03245E-8 | - |
| Pfam | PF00412 | LIM domain | 257 | 311 | 1.0E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 406 | 624 | 1.7E-106 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 283 | 338 | 1.33E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 249 | 282 | 4.07E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 250 | 315 | 1.9E-15 | - |
| SMART | SM00132 | lim_4 | 256 | 308 | 5.7E-15 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 255 | 315 | 11.8504 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 216 | 235 | 8.991136 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 257 | 291 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 571 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 192 | - | - |
| Coils | Coil | Coil | 90 | 228 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_006425761.1 | protein DA1-related 1 [Citrus clementina] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | V4SEK3 | LIM zinc-binding domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10025331mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology