Basic Information
Locus ID:
evm.TU.LG02.226
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2193656 | 2194899 | + | evm.TU.LG02.226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 38,238.59 Da | 47.43 | 82.07 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 284 | 323 | 2.8E-7 | IPR002893 |
| Pfam | PF12937 | F-box-like | 24 | 63 | 4.6E-6 | IPR001810 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 288 | 325 | 7.15E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 85 | 3.92E-10 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 85 | 202 | 9.55E-13 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 66 | 9.9E-7 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 67 | 221 | 4.1E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 273 | 328 | 1.8E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 281 | 323 | 10.9113 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_010250720.1 | PREDICTED: F-box protein At1g67340 [Nelumbo nucifera] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AF49 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology