Basic Information
Locus ID:
evm.TU.LG02.2113
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 40480147 | 40481504 | + | evm.TU.LG02.2113 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 42,531.04 Da | 56.73 | 65.60 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 328 | 370 | 1.72844E-19 | - |
| Pfam | PF13639 | Ring finger domain | 329 | 370 | 7.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 374 | 3.3E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 375 | 1.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 329 | 369 | 8.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 329 | 370 | 12.223724 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 130 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012437056.1 | probable E3 ubiquitin-protein ligase RHG1A [Gossypium raimondii] | 0 |
| Q7XTV7 | Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P5X5E5 | RING-type domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA22106 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2112, evm.TU.LG02.2113 |