Basic Information
Locus ID:
evm.TU.LG02.1984
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 38739224 | 38744548 | + | evm.TU.LG02.1984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 149,011.23 Da | 50.16 | 85.00 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1152 | 1265 | 2.79258E-23 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 727 | 885 | 2.89424E-46 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 295 | 946 | 2.7E-97 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1159 | 1255 | 7.7E-8 | IPR001650 |
| Pfam | PF07496 | CW-type Zinc Finger | 552 | 595 | 2.0E-13 | IPR011124 |
| Pfam | PF00646 | F-box domain | 252 | 284 | 8.7E-4 | IPR001810 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 805 | 1285 | 1.94E-32 | IPR027417 |
| SUPERFAMILY | SSF81383 | F-box domain | 242 | 283 | 1.44E-6 | IPR036047 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 277 | 373 | 2.54E-8 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 731 | 903 | 2.9E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1061 | 1320 | 7.3E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 716 | 908 | 5.0E-24 | IPR038718 |
| Gene3D | G3DSA:3.30.40.100 | - | 548 | 599 | 1.8E-14 | - |
| SMART | SM00487 | ultradead3 | 288 | 887 | 6.1E-12 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1173 | 1255 | 3.1E-5 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1147 | 1301 | 10.269918 | IPR001650 |
| ProSiteProfiles | PS51050 | Zinc finger CW-type profile. | 547 | 598 | 12.951066 | IPR011124 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 733 | 863 | 11.647102 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1041 | 1050 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 526 | - | - |
| Coils | Coil | Coil | 1279 | 1299 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54460.1 | SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein. | 0 |
| RefSeq | XP_031287669.1 | F-box protein At3g54460 [Pistacia vera] | 0 |
| Q9M1I1 | F-box protein At3g54460 OS=Arabidopsis thaliana OX=3702 GN=At3g54460 PE=2 SV=1 | 0 | |
| TrEMBL | V4U415 | F-box protein At3g54460 OS=Citrus clementina OX=85681 GN=CICLE_v10004162mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1541 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17169 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032391 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29962, Sbi_jg43425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18477 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004235 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66254, Sgl70570 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014745, gene:ENSEOMG00000020728 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0004420, CQ.Regalona.r1.2BG0005620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165940 |
| Apiaceae | Apium graveolens | 3 | Ag11G04173, Ag7G01712, Ag8G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002180 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701638 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G08566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G54460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010067m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g07960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g065390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0876 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0889 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g09600 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0022s00035.v1.0, Dusal.0193s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1984 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014812 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02355 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4531, BH02.4584, CH02.4635 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0046780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0320710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_058087 |
| Poaceae | Oryza coarctata | 2 | Oco01G030060, Oco02G031210 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G403500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403035 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G000930, Chr05G033740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G794500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG069780, gene_TRIDC3BG078800 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G543900.1, TraesCS3D02G490000.1 |
| Poaceae | Zea mays | 2 | Zm00001eb140810_P001, Zm00001eb140820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10822 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9386 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG10.383, evm.TU.LG17.379, evm.TU.LG25.65 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g21150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.57 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7154 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13637 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14504, nbisL1-mrna-14505 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010191 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-243 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22075 |
| Salicaceae | Populus euphratica | 1 | populus_peu35074 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132615369 |
| Solanaceae | Solanum chilense | 1 | SOLCI001589500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004568 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14390 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3892 |
| Zosteraceae | Zostera marina | 1 | Zosma02g16880.v3.1 |