Basic Information
Locus ID:
evm.TU.LG02.1975
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 38643077 | 38650663 | + | evm.TU.LG02.1975 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 43,418.20 Da | 49.41 | 75.76 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 132 | 170 | 2.99837E-15 | - |
| CDD | cd03829 | Sina | 248 | 376 | 3.10586E-62 | - |
| Pfam | PF03145 | Seven in absentia protein family | 176 | 375 | 5.9E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 174 | 5.81E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 187 | 379 | 3.6E-46 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 243 | 375 | 4.4E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 185 | 3.9E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 242 | 5.1E-17 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 187 | 247 | 14.100185 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 170 | 9.346889 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 26 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_044462328.1 | E3 ubiquitin-protein ligase DIS1-like [Mangifera indica] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5QKH7 | RING-type E3 ubiquitin transferase OS=Citrus unshiu OX=55188 GN=CUMW_235710 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology