Basic Information
Locus ID:
evm.TU.LG02.1813
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 36346709 | 36349436 | - | evm.TU.LG02.1813 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 21,917.17 Da | 46.80 | 76.95 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 79 | 131 | 8.05739E-12 | - |
| Pfam | PF12906 | RING-variant domain | 79 | 130 | 2.2E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 133 | 4.24E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 142 | 5.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 78 | 131 | 3.7E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 71 | 137 | 18.249525 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 37 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006453532.1 | uncharacterized protein LOC18053718 [Citrus clementina] | 0 |
| TrEMBL | A0A2H5P815 | RING-CH-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_112180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology