Basic Information
Locus ID:
evm.TU.LG02.1758
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 35315280 | 35316461 | - | evm.TU.LG02.1758 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 43,624.04 Da | 76.84 | 59.49 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 192 | 233 | 1.48439E-24 | - |
| Pfam | PF14369 | zinc-ribbon | 8 | 39 | 1.3E-13 | IPR039525 |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 267 | 372 | 5.4E-38 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 191 | 233 | 1.4E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 239 | 1.37E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 239 | 7.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 11.95817 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_006435651.1 | probable E3 ubiquitin-protein ligase RHC2A [Citrus clementina] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A067FP31 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g039088mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology