Basic Information
Locus ID:
evm.TU.LG02.119
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1078396 | 1079585 | + | evm.TU.LG02.119 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.16 | 18,720.00 Da | 38.12 | 82.77 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 83 | 145 | 1.0436E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 7 | 68 | 5.5E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 82 | 144 | 2.7E-12 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 3 | 146 | 2.36E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 69 | 7.5E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 70 | 152 | 9.2E-23 | - |
| SMART | SM00054 | efh_1 | 119 | 147 | 1.2E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 83 | 111 | 5.5E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 8 | 36 | 0.0018 | IPR002048 |
| SMART | SM00054 | efh_1 | 44 | 72 | 9.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 40 | 75 | 8.571685 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 4 | 39 | 14.011288 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 115 | 150 | 10.050141 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 79 | 114 | 15.517639 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 53 | 65 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 17 | 29 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 92 | 104 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 128 | 140 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_027332913.1 | probable calcium-binding protein CML15 [Abrus precatorius] | 0 |
| Q9LQN4 | Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8JQR1 | probable calcium-binding protein CML15 OS=Abrus precatorius OX=3816 GN=LOC113847820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology