Basic Information
Locus ID:
evm.TU.LG02.1148
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 16886377 | 16891335 | + | evm.TU.LG02.1148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 99,278.80 Da | 71.45 | 57.73 | -1.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 812 | 852 | 2.59348E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 810 | 857 | 6.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 812 | 858 | 1.69E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 791 | 863 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 813 | 852 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 573 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 281 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_050155374.1 | uncharacterized protein LOC126629389 isoform X1 [Malus sylvestris] | 0 |
| TrEMBL | A0A498JCC9 | RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_013726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology