Basic Information
Locus ID:
evm.TU.LG02.1077
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG02 | 15220508 | 15224587 | + | evm.TU.LG02.1077 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 68,957.54 Da | 34.06 | 102.10 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 250 | 292 | 8.94813E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 458 | 495 | 1.2E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 246 | 316 | 1.8E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 374 | 413 | 2.5E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 322 | 4.54E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 344 | 618 | 1.44E-48 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 339 | 460 | 9.9E-26 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 319 | 6.2E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 461 | 628 | 2.6E-26 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 8 | 119 | 1.1E-10 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 249 | 312 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 456 | 496 | 0.23 | IPR000225 |
| SMART | SM00185 | arm_5 | 415 | 455 | 0.018 | IPR000225 |
| SMART | SM00185 | arm_5 | 374 | 414 | 1.2E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 40.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 245 | 319 | 44.707935 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | 14.8574 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_006436481.1 | U-box domain-containing protein 14 [Citrus clementina] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067E149 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g006877mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology