Basic Information
Locus ID:
evm.TU.LG01.984
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 11940780 | 11943358 | - | evm.TU.LG01.984 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 65,578.35 Da | 31.47 | 89.65 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 407 | 589 | 7.12954E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 48 | 209 | 4.14337E-92 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 45 | 213 | 1.2E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 242 | 357 | 4.1E-22 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 453 | 577 | 3.3E-14 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 407 | 601 | 1.48E-40 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 45 | 220 | 5.29E-44 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 237 | 384 | 3.27E-34 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 402 | 588 | 9.5E-54 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 232 | 394 | 6.5E-44 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 42 | 218 | 8.9E-62 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 40 | 601 | 3.0E-212 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 466 | 485 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_006429440.1 | pyruvate decarboxylase 2 [Citrus clementina] | 0 |
| O82647 | Pyruvate decarboxylase 1 OS=Arabidopsis thaliana OX=3702 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | V4SUL7 | pyruvate decarboxylase OS=Citrus clementina OX=85681 GN=CICLE_v10011317mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology