Basic Information
Locus ID:
evm.TU.LG01.89
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 1041871 | 1050223 | - | evm.TU.LG01.89 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 77,698.02 Da | 39.28 | 90.03 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11660 | SANT_TRF | 6 | 57 | 5.08982E-22 | - |
| CDD | cd17939 | DEADc_EIF4A | 321 | 519 | 2.10224E-136 | - |
| CDD | cd18787 | SF2_C_DEAD | 530 | 660 | 7.94474E-60 | - |
| Pfam | PF00538 | linker histone H1 and H5 family | 116 | 175 | 5.1E-9 | IPR005818 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 543 | 651 | 1.6E-28 | IPR001650 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 5 | 56 | 3.2E-8 | IPR017930 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 342 | 503 | 8.1E-40 | IPR011545 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 113 | 190 | 1.14E-12 | IPR036390 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 2 | 58 | 1.57E-15 | IPR009057 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 386 | 671 | 4.84E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 526 | 690 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.246.220 | - | 8 | 85 | 3.8E-19 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 111 | 192 | 6.6E-11 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 307 | 525 | 5.5E-67 | IPR027417 |
| SMART | SM00526 | h15plus2 | 112 | 177 | 1.3E-12 | IPR005818 |
| SMART | SM00487 | ultradead3 | 336 | 533 | 8.0E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 570 | 651 | 1.5E-31 | IPR001650 |
| SMART | SM00717 | sant | 4 | 59 | 3.7E-8 | IPR001005 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 348 | 518 | 28.742542 | IPR014001 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 1 | 61 | 16.390285 | IPR017930 |
| ProSiteProfiles | PS51504 | Linker histone H1/H5 globular (H15) domain profile. | 114 | 182 | 20.940245 | IPR005818 |
| ProSiteProfiles | PS50090 | Myb-like domain profile. | 1 | 57 | 8.176538 | IPR001005 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 317 | 345 | 10.40907 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 529 | 690 | 25.960007 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 464 | 472 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 86 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006426588.1 | eukaryotic initiation factor 4A-8 [Citrus clementina] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816ZBQ3 | MYB transcription factor (Fragment) OS=Brassica napus OX=3708 GN=DARMORV10_A07P38880.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology