Basic Information
Locus ID:
evm.TU.LG01.705
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 8496758 | 8502072 | + | evm.TU.LG01.705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 40,452.67 Da | 49.98 | 79.16 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.8935E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 335 | 370 | 1.6E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.7E-16 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 193 | 1.2E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 254 | 309 | 2.4E-21 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 250 | 317 | 1.15E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 316 | 376 | 9.94E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 152 | 203 | 7.98E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 83 | 1.27E-21 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 326 | 374 | 4.0E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 244 | 309 | 6.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 148 | 198 | 3.6E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.9E-27 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 335 | 372 | 1.7E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 155 | 195 | 1.1E-5 | IPR015940 |
| SMART | SM00727 | CBM | 252 | 295 | 2.2E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 378 | 9.7E-132 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 333 | 373 | 15.462643 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 153 | 196 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.671614 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 346 | 360 | 8.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 329 | 345 | 8.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 280 | 302 | 8.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 361 | 376 | 8.6E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 106 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006427690.2 | ubiquitin receptor RAD23b [Citrus clementina] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2H5PAR9 | Ubiquitin receptor RAD23 OS=Citrus unshiu OX=55188 GN=CUMW_119310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology