Basic Information
Locus ID:
evm.TU.LG01.699
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 8429399 | 8438615 | + | evm.TU.LG01.699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 38,818.76 Da | 70.74 | 89.94 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 80 | 128 | 1.0199E-16 | - |
| Pfam | PF12906 | RING-variant domain | 80 | 127 | 1.2E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 131 | 8.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 75 | 132 | 4.4E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 79 | 128 | 2.2E-14 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 72 | 134 | 19.038816 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021297154.1 | E3 ubiquitin-protein ligase MARCH1 isoform X1 [Herrania umbratica] | 0 |
| TrEMBL | A0A067DY77 | RING-CH-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041664mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology