Basic Information
Locus ID:
evm.TU.LG01.639
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8765990 | 8768111 | - | evm.TU.LG01.639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 48,536.96 Da | 42.40 | 72.90 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 142 | 411 | 1.08121E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 275 | 2.8E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 158 | 216 | 9.8E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 326 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 376 | 411 | 7.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 412 | 7.33E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 67 | 414 | 1.1E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 236 | 275 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 369 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 372 | 411 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 194 | 232 | 0.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 326 | 1.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 379 | 412 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 243 | 275 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 243 | 275 | 11.260138 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 379 | 412 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 200 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 9.124694 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 398 | 412 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology