Basic Information
Locus ID:
evm.TU.LG01.553
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Choline-phosphate cytidylyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 6540443 | 6549347 | + | evm.TU.LG01.553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 62,378.13 Da | 51.99 | 60.24 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02174 | CCT | 239 | 390 | 8.49081E-94 | IPR041723 |
| CDD | cd00065 | FYVE_like_SF | 44 | 71 | 0.0017878 | - |
| Pfam | PF01467 | Cytidylyltransferase-like | 244 | 373 | 7.4E-32 | IPR004821 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 42 | 90 | 6.33E-5 | IPR011011 |
| SUPERFAMILY | SSF52374 | Nucleotidylyl transferase | 242 | 374 | 2.88E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 211 | 457 | 4.5E-86 | IPR014729 |
| TIGRFAM | TIGR00125 | cyt_tran_rel: cytidyltransferase-like domain | 242 | 309 | 2.8E-20 | IPR004821 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 521 | - | - |
| Coils | Coil | Coil | 405 | 432 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32260.1 | phosphorylcholine cytidylyltransferase. | 0 |
| RefSeq | XP_034927077.1 | choline-phosphate cytidylyltransferase 1-like [Populus alba] | 0 |
| Q9ZV56 | Choline-phosphate cytidylyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=CCT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2EV53 | choline-phosphate cytidylyltransferase OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg8409 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064330 |
| Apiaceae | Apium graveolens | 1 | Ag7G00129 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.532.V1.1, AsparagusV1_07.534.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G12854 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2449 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.553 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036744 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.15, BH09.75, CH09.54 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0617090, gene-QOZ80_8BG0644650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0331110.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco02G032570 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g74620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G001900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G000640 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G602600.1.cds1, TraesCS3D02G542200.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb419060_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46876 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19197 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.412 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1892 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19676 |
| Salicaceae | Populus euphratica | 2 | populus_peu14536, populus_peu17017 |