Basic Information
Locus ID:
evm.TU.LG01.54
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 399330 | 399950 | + | evm.TU.LG01.54 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 23,324.21 Da | 51.62 | 65.83 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 26 | 76 | 4.74326E-25 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 28 | 74 | 8.8E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 24 | 87 | 4.24E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 88 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 28 | 74 | 3.4E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 28 | 75 | 12.533537 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 43 | 52 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_010686502.1 | E3 ubiquitin-protein ligase RMA1H1 [Beta vulgaris subsp. vulgaris] | 0 |
| P93030 | E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YMT9 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology