Basic Information
Locus ID:
evm.TU.LG01.510
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6003792 | 6011738 | + | evm.TU.LG01.510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 61,286.20 Da | 46.29 | 83.69 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 241 | 535 | 1.06557E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 498 | 535 | 2.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 365 | 0.0099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 313 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 240 | 276 | 4.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 235 | 535 | 1.67E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 228 | 538 | 1.4E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 367 | 407 | 1.9 | IPR001680 |
| SMART | SM00668 | ctlh | 75 | 132 | 9.1E-7 | IPR006595 |
| SMART | SM00320 | WD40_4 | 451 | 493 | 2.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 321 | 9.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 447 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 496 | 536 | 1.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 9.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 324 | 365 | 1.5E-4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 42 | 74 | 8.464374 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 277 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 277 | 9.625601 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 330 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 325 | 10.891048 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 535 | 11.65559 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 75 | 132 | 10.660894 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 535 | 14.084198 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021722150.1 | WD repeat-containing protein 26-like [Chenopodium quinoa] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8YVP9 | WD repeat-containing protein 26 OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology