Basic Information
Locus ID:
evm.TU.LG01.509
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 6096646 | 6107001 | - | evm.TU.LG01.509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 114,068.63 Da | 38.49 | 87.96 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 1.05425E-52 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 7.98606E-90 | - |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 396 | 8.0E-12 | IPR032284 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 751 | 6.1E-20 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 217 | 322 | 6.5E-20 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 547 | 613 | 1.2E-10 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 6.5E-19 | IPR011545 |
| Pfam | PF03195 | Lateral organ boundaries (LOB) domain | 878 | 972 | 1.1E-36 | IPR004883 |
| Pfam | PF09382 | RQC domain | 401 | 498 | 1.7E-23 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 3.73E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 542 | 617 | 1.92E-13 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 500 | 2.54E-23 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 399 | 4.0E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 538 | 619 | 1.1E-13 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 400 | 525 | 1.7E-33 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 1.2E-71 | IPR027417 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 2.8E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 2.0E-24 | IPR018982 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 4.7E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 456 | 2.8E-148 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 22.260233 | IPR014001 |
| ProSiteProfiles | PS50891 | LOB domain profile. | 876 | 977 | 24.736111 | IPR004883 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 216 | 368 | 19.033661 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 543 | 623 | 16.424013 | IPR002121 |
| Coils | Coil | Coil | 956 | 976 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_024040065.1 | uncharacterized protein LOC18041321 isoform X1 [Citrus clementina] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7GR66 | ATP-dependent DNA helicase OS=Acer yangbiense OX=1000413 GN=EZV62_026106 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology