Basic Information
Locus ID:
evm.TU.LG01.469
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5370989 | 5397759 | + | evm.TU.LG01.469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 104,895.79 Da | 35.68 | 87.12 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 5 | 199 | 7.76817E-93 | - |
| CDD | cd18794 | SF2_C_RecQ | 200 | 334 | 4.71112E-54 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 19 | 178 | 2.9E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 546 | 611 | 1.6E-13 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 749 | 1.9E-18 | IPR029491 |
| Pfam | PF09382 | RQC domain | 402 | 499 | 2.7E-23 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 224 | 324 | 8.5E-21 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 337 | 399 | 2.3E-12 | IPR032284 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 397 | 500 | 9.66E-25 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 617 | 5.67E-18 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 56 | 339 | 1.52E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 198 | 7.5E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 200 | 400 | 1.3E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 401 | 521 | 4.6E-34 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 538 | 621 | 9.9E-18 | IPR044876 |
| SMART | SM00490 | helicmild6 | 244 | 325 | 2.4E-28 | IPR001650 |
| SMART | SM00341 | hrdc7 | 541 | 621 | 2.3E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 406 | 510 | 4.4E-22 | IPR018982 |
| SMART | SM00487 | ultradead3 | 13 | 208 | 4.6E-28 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 6 | 457 | 6.9E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 219 | 370 | 20.243656 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 541 | 621 | 18.308914 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 25 | 192 | 22.624903 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 820 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 799 | 820 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 798 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| O93530 | Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN OS=Xenopus laevis OX=8355 GN=wrn PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MZ07 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology