Basic Information
Locus ID:
evm.TU.LG01.450
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein UNUSUAL FLORAL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 5545267 | 5554181 | + | evm.TU.LG01.450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 46,115.31 Da | 33.87 | 86.89 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 37 | 1.5E-6 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 154 | 193 | 4.7E-6 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 73 | 6.67E-10 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 60 | 291 | 4.71E-19 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 42 | 343 | 4.0E-18 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 40 | 2.7E-8 | - |
| SMART | SM00256 | fbox_2 | 5 | 44 | 0.0017 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006427220.2 | F-box protein At5g49610 [Citrus clementina] | 0 |
| TrEMBL | A0A061GAA4 | Galactose oxidase/kelch repeat superfamily protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_028293 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25406, jg25407 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127810 |
| Apiaceae | Apium graveolens | 1 | Ag5G00134 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027755 |
| Salicaceae | Populus euphratica | 1 | populus_peu33748 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012683 |