Basic Information
Locus ID:
evm.TU.LG01.35
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 239789 | 245436 | + | evm.TU.LG01.35 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 77,458.74 Da | 50.43 | 67.27 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 414 | 693 | 1.54987E-53 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 442 | 7.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 484 | 2.8E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 78 | 97 | 1.0E-4 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 608 | 0.002 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 404 | 692 | 3.66E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 360 | 533 | 1.3E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 534 | 693 | 4.5E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 531 | 567 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 654 | 693 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 608 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 488 | 528 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 484 | 1.7E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 452 | 484 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 661 | 693 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 451 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 484 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 445 | 9.915599 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 69 | 101 | 8.684448 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 661 | 693 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 495 | 537 | 10.675542 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 429 | 443 | 7.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 680 | 693 | 7.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 471 | 485 | 7.6E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 263 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 227 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_010686452.1 | transcriptional corepressor LEUNIG isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9RWK8 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_026770 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology