Basic Information
Locus ID:
evm.TU.LG01.318
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 3878280 | 3881206 | - | evm.TU.LG01.318 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.50 | 37,982.57 Da | 47.58 | 67.21 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 57 | 342 | 1.6E-90 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 229 | 332 | 5.69E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 226 | 344 | 2.5E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 231 | 333 | 25.028246 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_044486914.1 | auxin-responsive protein IAA27-like [Mangifera indica] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | V4SSS4 | Auxin-responsive protein OS=Citrus clementina OX=85681 GN=CICLE_v10025988mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology