Basic Information
Locus ID:
evm.TU.LG01.2893
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 54723397 | 54726069 | - | evm.TU.LG01.2893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 27,540.46 Da | 49.95 | 70.08 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 189 | 233 | 6.6E-13 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 31 | 95 | 7.7E-8 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 236 | 1.14E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 237 | 1.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 191 | 232 | 6.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 191 | 233 | 12.858103 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006422179.1 | RING-H2 finger protein ATL20 [Citrus clementina] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5P091 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_089970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology