Basic Information
Locus ID:
evm.TU.LG01.2872
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
pentatricopeptide repeat-containing protein At5g08310
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 54421515 | 54424049 | - | evm.TU.LG01.2872 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 94,804.02 Da | 36.26 | 95.73 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 223 | 250 | 0.013 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 186 | 216 | 2.4E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 761 | 789 | 0.0015 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 446 | 475 | 2.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 292 | 318 | 4.4E-5 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 478 | 526 | 2.5E-11 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 613 | 645 | 7.2E-11 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 718 | 751 | 3.3E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 652 | 701 | 1.3E-16 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 396 | 421 | 0.005 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 323 | 359 | 6.6E-9 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 221 | 753 | 9.86E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 213 | 4.1E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 667 | 827 | 9.9E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 385 | 553 | 3.7E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 214 | 286 | 2.4E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 554 | 666 | 6.0E-29 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 287 | 384 | 7.7E-19 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 395 | 421 | 0.0028 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 585 | 619 | 0.0022 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 726 | 757 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 292 | 324 | 1.3E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 761 | 793 | 4.4E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 655 | 688 | 1.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 186 | 217 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 446 | 478 | 7.1E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 620 | 654 | 4.7E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 690 | 724 | 1.6E-11 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 222 | 251 | 0.0023 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 481 | 513 | 3.5E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 327 | 360 | 1.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 515 | 548 | 8.8E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 289 | 323 | 11.717688 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | 13.08785 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 618 | 652 | 13.230347 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 758 | 792 | 9.371969 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 688 | 722 | 13.920909 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 443 | 477 | 10.303679 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 723 | 757 | 11.816339 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | 12.824779 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 513 | 547 | 9.843305 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 583 | 617 | 8.977363 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 219 | 253 | 8.714292 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 184 | 218 | 9.788499 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 653 | 687 | 11.421732 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08310.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_031272440.1 | putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Pistacia vera] | 0 |
| P0C8Q6 | Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7HIQ7 | Pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Acer yangbiense OX=1000413 GN=EZV62_018233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18500 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038576 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202760 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14693, Sbi_jg55458, Sbi_jg55459 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012506 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78064, Sgl80568 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9BG0021580 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225040 |
| Apiaceae | Apium graveolens | 1 | Ag8G01964 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G010520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712455 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1163.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G08846 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08310.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015588m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34640.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g027900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0558 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2872 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16515 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0377900, gene-QOZ80_5BG0425020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0662080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010760, gene-QYE76_010824 |
| Poaceae | Oryza coarctata | 1 | Oco10G006600 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g24930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K281200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G014780, Chr12G014790 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G330600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG020010, gene_TRIDC7BG010020 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G161600.1.cds1, TraesCS7B02G066700.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb009120_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-43398 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1490, evm.TU.LG26.176 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.336 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15193 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19832 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-285 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.78 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007627 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21430 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17284 |
| Salicaceae | Populus euphratica | 1 | populus_peu13919 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613765 |
| Solanaceae | Solanum chilense | 1 | SOLCI002282700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016104 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20690_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G0844 |