Basic Information
Locus ID:
evm.TU.LG01.2868
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 54373721 | 54392209 | + | evm.TU.LG01.2868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.11 | 155,840.98 Da | 52.78 | 63.60 | -1.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1003 | 1076 | 1.57313E-5 | - |
| Pfam | PF01486 | K-box region | 1213 | 1301 | 5.1E-22 | IPR002487 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 315 | 378 | 2.5E-5 | IPR018866 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 978 | 1075 | 5.7E-14 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 679 | 1123 | 3.85E-34 | - |
| SUPERFAMILY | SSF55455 | SRF-like | 1173 | 1211 | 7.59E-5 | IPR036879 |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 672 | 1101 | 3.0E-164 | - |
| SMART | SM00558 | cupin_9 | 783 | 1092 | 3.2E-72 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 364 | 8.801028 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 802 | 1092 | 28.677395 | IPR003347 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 1217 | 1307 | 15.514358 | IPR002487 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 941 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1125 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 913 | 955 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 316 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 573 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 177 | - | - |
| Coils | Coil | Coil | 1224 | 1244 | - | - |
| Coils | Coil | Coil | 1254 | 1293 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07610.1 | Transcription factor jumonji (jmjC) domain-containing protein. IBM1 likely encodes a protein with histone H3mK9 demethylation activity. It may preferentially demethylate H3mK9 at low-copy loci to protect them from silencing by nearby heterochromatin by preventing the spread of cytosine methylation. BONSAI (At1g73177) is hypermethylated in ibm1 mutants. ibm1 mutants have morphological defects that become apparent at the F3 generation, including small narrow leaves, arrested flower development, and faulty pollen development. These phenotypes cannot result solely from the BONSAI hypermethylation. Aberrant phenotypes in ibm1 mutants in both DNA methylation and plant development can be suppressed by mutations in the KYP H3K9 methyltransferase or he CMT3 non CG-cytosine methylase. | 0 |
| RefSeq | XP_031262765.1 | LOW QUALITY PROTEIN: lysine-specific demethylase JMJ25-like [Pistacia vera] | 0 |
| Q9SSE9 | Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana OX=3702 GN=JMJ25 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3GPQ7 | Transcription factor, K-box OS=Corchorus capsularis OX=210143 GN=CCACVL1_24416 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology