Basic Information
Locus ID:
evm.TU.LG01.2821
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 53870981 | 53877442 | + | evm.TU.LG01.2821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 71,781.28 Da | 35.25 | 79.09 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 646 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 334 | 367 | 8.9E-8 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 482 | 536 | 6.5E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 326 | 646 | 8.01E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 650 | 7.2E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 171 | 456 | 4.5E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 610 | 648 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 555 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 329 | 368 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 413 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 513 | 0.0039 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 616 | 650 | 9.99469 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 616 | 650 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 336 | 377 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 558 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 10 | 35 | 7.609407 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 336 | 371 | 11.101955 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 252 | - | - |
| Coils | Coil | Coil | 175 | 209 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044468419.1 | WD repeat-containing protein 91-like [Mangifera indica] | 0 |
| Q55FJ2 | WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr91 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P5TIH2 | WD repeat-containing protein 91 homolog isoform X1 OS=Prunus avium OX=42229 GN=LOC110767635 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15177, Sbi_jg56011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019975 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01479, Sgl06644 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002901, gene:ENSEOMG00000030780 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202830 |
| Apiaceae | Apium graveolens | 2 | Ag4G02677, Ag4G02678 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21309 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11759, nbisL1-mrna-11760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010481 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24609, Lb4G25164 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1784, BH01.2108, CH01.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127660, gene-QOZ80_2BG0183140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011413 |
| Poaceae | Oryza coarctata | 2 | Oco09G005670, Oco10G006310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23430.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G207600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502568 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013030, Chr09G010930, Chr13G014270, Chr13G014300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G280700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023060, gene_TRIDC1BG027910 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G152000.5, TraesCS1B02G169400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16180 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02760, gene.Posoc09g08210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29278 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17811 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2214, nbisL1-mrna-2215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2316 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6332 |
| Salicaceae | Populus euphratica | 1 | populus_peu28136 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616635 |
| Solanaceae | Solanum chilense | 1 | SOLCI006434500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1520 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13770.v3.1 |