Basic Information
Locus ID:
evm.TU.LG01.2798
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 64826848 | 64828618 | + | evm.TU.LG01.2798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 38,246.54 Da | 32.75 | 82.13 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 171 | 200 | 0.14 | IPR006597 |
| Pfam | PF01753 | MYND finger | 290 | 331 | 6.4E-7 | IPR002893 |
| Pfam | PF08238 | Sel1 repeat | 132 | 168 | 0.88 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 99 | 111 | 25.0 | IPR006597 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 286 | 334 | 1.26E-9 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 83 | 200 | 3.92E-12 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 68 | 1.96E-6 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 66 | 235 | 1.0E-15 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 282 | 336 | 2.0E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 289 | 331 | 11.300194 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_021855141.1 | F-box protein At1g67340 [Spinacia oleracea] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZJ29 | MYND-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology