Basic Information
Locus ID:
evm.TU.LG01.2786
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 64715216 | 64718723 | + | evm.TU.LG01.2786 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 19,888.68 Da | 52.86 | 78.63 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 71 | 1.48671E-38 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.1E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 145 | 7.6E-18 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 88 | 3.53E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 75 | 1.5E-25 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.1E-36 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 175 | 10.107664 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 29.884617 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.0E-27 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.0E-27 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.0E-27 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 166 | - | - |
| Coils | Coil | Coil | 86 | 113 | - | - |
| Coils | Coil | Coil | 120 | 140 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45650.1 | AGAMOUS-like 6. sequence suggests this encodes a MADS-box transcription factor | 0 |
| RefSeq | XP_034672807.1 | MADS-box transcription factor 15-like isoform X5 [Vitis riparia] | 0 |
| A0A3Q7EKL1 | Protein AGAMOUS-LIKE 6 OS=Solanum lycopersicum OX=4081 GN=AGL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C8ZG19 | MADS-box transcription factor OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology