Basic Information
Locus ID:
evm.TU.LG01.2708
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 63905255 | 63905837 | - | evm.TU.LG01.2708 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.19 | 18,090.53 Da | 33.78 | 95.77 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 89 | 151 | 6.40256E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 87 | 150 | 1.2E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 12 | 72 | 6.8E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 6 | 151 | 5.13E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 82 | 1.8E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 83 | 155 | 6.6E-23 | - |
| SMART | SM00054 | efh_1 | 125 | 153 | 5.5E-8 | IPR002048 |
| SMART | SM00054 | efh_1 | 89 | 117 | 3.8E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 13 | 41 | 0.0075 | IPR002048 |
| SMART | SM00054 | efh_1 | 49 | 77 | 0.56 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 85 | 120 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 45 | 80 | 9.241175 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 9 | 44 | 13.509171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 121 | 156 | 14.959732 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 98 | 110 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 22 | 34 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 58 | 70 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 134 | 146 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_021761238.1 | probable calcium-binding protein CML15 [Chenopodium quinoa] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R3U8 | Calcium-binding protein CML16 OS=Spinacia oleracea OX=3562 GN=SOVF_109880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology