Basic Information
Locus ID:
evm.TU.LG01.2700
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 52557637 | 52561539 | + | evm.TU.LG01.2700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 142,344.13 Da | 28.51 | 110.32 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 288 | 309 | 1.3 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 66 | 6.0E-11 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 681 | 700 | 2.0 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 729 | 788 | 3.1E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1026 | 1293 | 3.5E-45 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1002 | 1294 | 8.06E-77 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 638 | 914 | 2.38E-58 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 98 | 475 | 1.26E-59 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 425 | 614 | 6.32E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 361 | 1.4E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 621 | 924 | 8.6E-84 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 620 | 1.0E-69 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 142 | 209 | 4.3E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 141 | 4.9E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 985 | 1097 | 9.2E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1098 | 1300 | 1.5E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 595 | 632 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 404 | 428 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 547 | 571 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 116 | 140 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 188 | 212 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 751 | 775 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 333 | 357 | 350.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 1022 | 1294 | 4.2E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 92 | 115 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 679 | 703 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 679 | 698 | 43.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 92 | 118 | 170.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 188 | 215 | 67.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 751 | 774 | 87.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 571 | 597 | 400.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 285 | 314 | 200.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 333 | 356 | 240.0 | - |
| SMART | SM00369 | LRR_typ_2 | 213 | 237 | 16.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 140 | 169 | 230.0 | - |
| SMART | SM00369 | LRR_typ_2 | 827 | 851 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 285 | 309 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 727 | 750 | 0.44 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1022 | 1294 | 38.435307 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1028 | 1051 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1144 | 1156 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 679 | 692 | 5.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 216 | 229 | 5.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_031266111.1 | LOW QUALITY PROTEIN: leucine-rich repeat receptor protein kinase EMS1 [Pistacia vera] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1VFY3 | Leucine-rich repeat receptor protein kinase EXS OS=Morella rubra OX=262757 GN=CJ030_MR6G019881 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |