Basic Information
Locus ID:
evm.TU.LG01.2698
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 52523626 | 52527993 | + | evm.TU.LG01.2698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 54,966.08 Da | 43.02 | 80.29 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.1E-17 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 220 | 267 | 7.9E-7 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 178 | 208 | 0.0069 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 274 | 8.39E-47 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 375 | 1.77E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 150 | 1.3E-31 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 305 | 383 | 3.6E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 151 | 270 | 1.8E-21 | IPR036770 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 220 | 252 | 1.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 177 | 206 | 0.0017 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.99 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 177 | 206 | 9.993605 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.416153 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 177 | 209 | 10.65946 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 220 | 246 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.923309 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.905817 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 220 | 246 | 10.68342 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.214112 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.53241 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 334 | 343 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 491 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021648639.1 | E3 ubiquitin-protein ligase XBAT33-like [Hevea brasiliensis] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5NM09 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_057700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology