Basic Information
Locus ID:
evm.TU.LG01.2646
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62795627 | 62797566 | + | evm.TU.LG01.2646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 30,781.94 Da | 54.27 | 95.97 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 221 | 263 | 4.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 266 | 1.81E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 268 | 1.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 262 | 1.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 263 | 12.887609 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12190.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009623348.2 | E3 ubiquitin-protein ligase RNF181-like [Nicotiana tomentosiformis] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1S3X591 | E3 ubiquitin-protein ligase RNF181-like OS=Nicotiana tabacum OX=4097 GN=LOC107761328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2579, evm.TU.LG01.2604, evm.TU.LG01.2609 ... |