Basic Information
Locus ID:
evm.TU.LG01.2613
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Source PGD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62490641 | 62495596 | - | evm.TU.LG01.2613 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 51,805.34 Da | 58.49 | 95.04 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 405 | 448 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 389 | 451 | 9.77E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 367 | 452 | 5.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 406 | 447 | 2.2E-9 | IPR001841 |
| SMART | SM00744 | ringv_2 | 405 | 448 | 0.0028 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 406 | 448 | 13.226928 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_029120847.1 | E3 ubiquitin-protein ligase MPSR1-like [Elaeis guineensis] | 0 |
| Q5BIY5 | RING finger protein 145 OS=Xenopus laevis OX=8355 GN=rnf145 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8N4EZ76 | E3 ubiquitin-protein ligase MPSR1-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109505986 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05910.1 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2020, evm.TU.LG01.2613, evm.TU.LG13.1520 ... |