Basic Information
Locus ID:
evm.TU.LG01.2579
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 62205693 | 62206349 | - | evm.TU.LG01.2579 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 21,420.31 Da | 46.75 | 85.50 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 143 | 184 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 187 | 8.25E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 189 | 1.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 183 | 7.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 184 | 12.489278 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64920.1 | COP1-interacting protein 8. Encodes a RING-H2 protein that interacts with the RING finger domain of COP1. CIP8 exhibits a strong interaction with the E2 ubiquitin conjugating enzyme AtUBC8 through its N-terminal domain and promotes ubiquitination in an E2-dependent fashion in vitro. It is possible that the AtUBC8-CIP8 module might interact with COP1 in vivo, thereby participating in proteasome-mediated degradation of HY5. | 0 |
| RefSeq | XP_008238538.2 | PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Prunus mume] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J5UWM6 | RING-type domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS31830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2579, evm.TU.LG01.2604, evm.TU.LG01.2609 ... |