Basic Information
Locus ID:
evm.TU.LG01.2534
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61907167 | 61910333 | + | evm.TU.LG01.2534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 89,966.82 Da | 46.39 | 83.79 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 69 | 1.9E-10 | IPR001810 |
| Pfam | PF07734 | F-box associated | 607 | 730 | 2.2E-9 | IPR006527 |
| Pfam | PF07734 | F-box associated | 243 | 340 | 7.3E-9 | IPR006527 |
| Pfam | PF00646 | F-box domain | 421 | 443 | 0.0014 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 98 | 1.14E-14 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 417 | 443 | 5.1E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 31 | 69 | 5.8E-9 | - |
| SMART | SM00256 | fbox_2 | 33 | 73 | 5.1E-10 | IPR001810 |
| SMART | SM00256 | fbox_2 | 422 | 462 | 12.0 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 519 | 742 | 2.1E-22 | IPR017451 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 154 | 364 | 8.2E-19 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 27 | 74 | 11.828977 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 416 | 463 | 8.808615 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_021733689.1 | F-box protein CPR30-like [Chenopodium quinoa] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MXI1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 29 | gene_12224, gene_12225, gene_12226, gene_12227, gene_12228 ... |
| Amaranthaceae | Atriplex hortensis | 24 | Ah000678, Ah000681, Ah000683, Ah000684, Ah000689, Ah000693 ... |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116570 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg21175, Sbi_jg22628, Sbi_jg30470, Sbi_jg30490 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg16516, Seu_jg28633, Seu_jg28651 |
| Amaranthaceae | Suaeda aralocaspica | 5 | GOSA_00014232, GOSA_00014233, GOSA_00014978, GOSA_00014983 ... |
| Amaranthaceae | Suaeda glauca | 31 | Sgl01161, Sgl01173, Sgl06260, Sgl10884, Sgl12033, Sgl12232 ... |
| Amaranthaceae | Chenopodium album | 18 | gene:ENSEOMG00000005540, gene:ENSEOMG00000005896 ... |
| Amaranthaceae | Chenopodium quinoa | 23 | CQ.Regalona.r1.1AG0004930, CQ.Regalona.r1.5AG0021990 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G10874, Lb3G17282 |
| Portulacaceae | Portulaca oleracea | 15 | evm.TU.LG01.2534, evm.TU.LG01.2535, evm.TU.LG01.2536 ... |