Basic Information
Locus ID:
evm.TU.LG01.2498
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61616231 | 61621234 | + | evm.TU.LG01.2498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 56,451.87 Da | 43.10 | 87.55 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 55 | 1.1E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 71 | 2.35E-9 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 106 | 285 | 8.37E-5 | IPR011043 |
| SMART | SM00256 | fbox_2 | 18 | 59 | 0.006 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 128 | 315 | 6.5E-23 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_004292879.1 | PREDICTED: F-box protein CPR30-like [Fragaria vesca subsp. vesca] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXS7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16204 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2494, evm.TU.LG01.2495, evm.TU.LG01.2496 ... |