Basic Information
Locus ID:
evm.TU.LG01.2495
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61596959 | 61598314 | + | evm.TU.LG01.2495 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 51,654.39 Da | 44.50 | 83.10 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 55 | 5.2E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 79 | 2.49E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 56 | 5.0E-7 | - |
| SMART | SM00256 | fbox_2 | 18 | 58 | 9.6E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 134 | 346 | 1.3E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 12 | 64 | 11.352077 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_010671904.2 | F-box protein CPR1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9DXS7 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16204 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG01.2494, evm.TU.LG01.2495, evm.TU.LG01.2496 ... |