HalophFGD

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Basic Information
Locus ID: evm.TU.LG01.2448
Species & Taxonomic ID: Portulaca oleracea & 46147
Genome Assembly: GWHCBIU00000000
Description: A Receptor for Ubiquitination Targets
Maps and Mapping Data
Chromosome Start End Strand ID
chr1 61096293 61098270 + evm.TU.LG01.2448
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.31 19,884.68 Da 44.68 100.22 -0.20
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 15 53 6.4E-7 IPR001810
SUPERFAMILY SSF81383 F-box domain 14 55 1.44E-8 IPR036047
SMART SM00256 fbox_2 15 55 9.8E-5 IPR001810
ProSiteProfiles PS50181 F-box domain profile. 9 55 8.861604 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_028127095.1 F-box protein At3g07870-like [Camellia sinensis] 0
TrEMBL A0A2N9ELV0 F-box domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3563 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 1 gene_19492
Brassicaceae Brassica nigra 1 BniB04g002080.2N
Portulacaceae Portulaca oleracea 10 evm.TU.LG01.2444, evm.TU.LG01.2445, evm.TU.LG01.2446 ...
evm.TU.LG01.2448, evm.TU.LG01.2449, evm.TU.LG04.1430, evm.TU.LG13.798, evm.TU.LG14.1615, evm.TU.LG14.1617, evm.TU.LG15.1137
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.