Basic Information
Locus ID:
evm.TU.LG01.2445
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
F-box kelch-repeat protein At3g23880-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 61078814 | 61079983 | - | evm.TU.LG01.2445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 41,633.42 Da | 44.97 | 88.72 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 3 | 42 | 1.9E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 51 | 1.7E-8 | IPR036047 |
| SMART | SM00256 | fbox_2 | 3 | 43 | 2.9E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 138 | 306 | 2.0E-14 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 9.523964 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_047326813.1 | F-box/kelch-repeat protein At3g23880-like [Impatiens glandulifera] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J7DY47 | F-box domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW02G00181 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19492 |
| Brassicaceae | Brassica nigra | 1 | BniB04g002080.2N |
| Portulacaceae | Portulaca oleracea | 10 | evm.TU.LG01.2444, evm.TU.LG01.2445, evm.TU.LG01.2446 ... |