Basic Information
Locus ID:
evm.TU.LG01.2344
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 60066220 | 60076083 | - | evm.TU.LG01.2344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 162,854.84 Da | 43.05 | 70.64 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15532 | PHD2_CHD_II | 1038 | 1077 | 2.71034E-17 | - |
| CDD | cd04301 | NAT_SF | 1232 | 1292 | 0.00296144 | - |
| Pfam | PF16135 | Tify domain binding domain | 960 | 1009 | 9.6E-19 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1227 | 1311 | 7.87E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 1030 | 1084 | 1.13E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1028 | 1141 | 5.0E-17 | IPR013083 |
| SMART | SM00249 | PHD_3 | 1037 | 1078 | 2.1E-9 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1079 | 1138 | 31.0 | IPR001965 |
| SMART | SM00384 | AT_hook_2 | 222 | 234 | 42.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 541 | 553 | 4.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 587 | 599 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 496 | 508 | 1.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 436 | 448 | 14.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 671 | 683 | 1.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 279 | 291 | 60.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 389 | 401 | 60.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 626 | 638 | 20.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 334 | 346 | 60.0 | IPR017956 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 1035 | 1080 | 9.8727 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1188 | 1329 | 9.511301 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 1038 | 1077 | - | IPR019786 |
| PRINTS | PR00929 | AT-hook-like domain signature | 585 | 596 | 3.7E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 541 | 551 | 3.7E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 669 | 679 | 3.7E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1455 | 1472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 775 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1393 | 1472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 623 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 471 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 400 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.4 | - | 0 |
| RefSeq | XP_010679053.2 | uncharacterized protein LOC104894503 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RSQ4 | PHD-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_032500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology