Basic Information
Locus ID:
evm.TU.LG01.2290
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 46017853 | 46023833 | - | evm.TU.LG01.2290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 26,269.65 Da | 57.78 | 92.27 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 131 | 225 | 6.6E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 129 | 226 | 5.23E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 113 | 228 | 4.4E-48 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 131 | 225 | 6.3E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 128 | 226 | 4.0E-39 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 153 | 168 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 164 | 179 | 2.1E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 129 | 142 | 2.1E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 186 | 200 | 2.1E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 127 | 226 | 18.30061 | IPR001848 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011101129.1 | 40S ribosomal protein S20-2 [Sesamum indicum] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7AIP9 | Putative Ribosomal protein S10p/S20e family protein isoform 1 OS=Davidia involucrata OX=16924 GN=Din_025928 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology