Basic Information
Locus ID:
evm.TU.LG01.2271
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 59212276 | 59221474 | + | evm.TU.LG01.2271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 83,081.42 Da | 51.38 | 73.14 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 56 | 210 | 1.16078E-31 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 81 | 168 | 1.5E-11 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 363 | 421 | 3.7E-12 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 421 | 494 | 7.3E-7 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 16 | 360 | 6.4E-112 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 362 | 488 | 1.61E-36 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 211 | 360 | 5.23E-65 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 15 | 208 | 1.59E-52 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 48 | 204 | 8.4E-164 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 16 | 358 | 8.4E-164 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 362 | 477 | 6.9E-30 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 575 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17980.1 | poly(A) polymerase 1. Encodes a poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_010673060.1 | nuclear poly(A) polymerase 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LMT2 | Nuclear poly(A) polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=PAPS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9APK9 | polynucleotide adenylyltransferase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology